PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_180.9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 322aa    MW: 36625.3 Da    PI: 6.7154
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_180.9genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.3e-30148205258
                                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                                  +D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers+edp v++itY+ eH h
  evm.model.supercontig_180.9 148 SDKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSREDPGVFIITYTAEHSH 205
                                  79*************************998***************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.4E-32133208IPR003657WRKY domain
SuperFamilySSF1182901.2E-26141208IPR003657WRKY domain
PROSITE profilePS5081133.029142208IPR003657WRKY domain
SMARTSM007742.4E-35147207IPR003657WRKY domain
PfamPF031062.7E-25149205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGEYVCMEGW DLQAIVRAGC TNFEACGDFK VPPSSCFGLD HHELRSMDEP EDLLISSEIF  60
QESREVASDE LGQLYKPFYP VLHPLSPQTI FATSMSLPEE FKHPQNGQKK KLLQPLPSGS  120
AHEPKAKRSK KTQQKKVVKQ VTEDDLTSDK WAWRKYGQKP IKGSPYPRSY YRCSSSKGCL  180
ARKQVERSRE DPGVFIITYT AEHSHGHPTR RNSLAGTTRV KSSTPKFPAT PTHDHDHDHD  240
HDHLHLPPPK PLTKPTEYDR LLQYVAVKQE EERKPAVFKG CDHDLDISMP DIIFSDELFP  300
NLENLYGMAM EFSFDGCFSD Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-18137208474WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368768.12e-82hypothetical protein POPTR_0001s09900g
SwissprotQ9SUS16e-58WRK29_ARATH; Probable WRKY transcription factor 29
TrEMBLU5GVF52e-82U5GVF5_POPTR; Uncharacterized protein
STRINGPOPTR_0001s09900.16e-82(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60902545
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.11e-39WRKY family protein